Features

• Data Import
  
  • Supports both MS Excel 97 (or more recent) and comma-delimited (CSV) text files
    
    
• Data Preprocessing
  • Normalization methods: chip mean, quantile-quantile, linear model
  • Transformation methods: log base 2, log base e, log base 10
    
    
• Quality Control Statistics
  • Deleted residuals
    
    
• Analysis
  • Hypothesis tests: Equal Variance t-test, Unequal Variance t-test, Exact Bootstrap, Random Bootstrap, Chebby Checker
  • Multiplicity Control Methods: Bonferroni, Sidak, FDR, FDRD, Mix-o-matic
  • Estimates: Empirical Bayes estimates of the mean difference
  • Power Analysis: a web-based resource to assist investigators in the planning and design of microarray and expression based experiments
    
    
• Report Generation
  • Chip level statistics, p-values, deleted residuals as comma-delimited (CSV) text files for easier post-processing.
  • Graphs: deleted residuals, mix-o-matic graphs, posterier probability plots.
  • Summary of results in HTML file
  • Exports normalized or transformed data as CSV text file