QTLBIM (QTL Bayesian Interval Mapping)
an R package for QTL Mapping using Bayesian Inference
an R package for QTL Mapping using Bayesian Inference
- Daniel Shriner and Nengjun Yi (2008) Deviance information criterion (DIC) in Bayesian multiple QTL mapping, Computational Statistics & Data Analysis. (In Press, Available Online) [Paper]
- N Yi and D Shriner (2008) Advances in Bayesian multiple quantitative trait loci mapping in experimental crosses. Heredity, 100: 240–252 [Paper]
- Nengjun Yi, Daniel Shriner, Samprit Banerjee, Tapan Mehta, Daniel Pomp and Brian S. Yandell (2007), An Efficient Bayesian Model Selection Approach for Interacting Quantitative Trait Loci Models With Many Effects. Genetics, 176: 1865-1877 [Paper]
- Nengjun Yi, Samprit Banerjee, Daniel Pomp and Brian S. Yandell (2007), Bayesian Mapping of Genomewide Interacting Quantitative Trait Loci for Ordinal Traits. Genetics, 176: 1855-1864 [Paper]
- Gaffney PJ (2001) An efficient reversible jump Markov chain Monte Carlo approach to detect multiple loci and their effects in inbred crosses. PhD thesis, UW-Madison Statistics. [Paper]
- Satagopan JM, Yandell BS (1996) Estimating the number of quantitative trait loci via Bayesian model determination. Special Contributed Paper Session on Genetic Analysis of Quantitative Traits and Complex Diseases, Biometric Section, Joint Statistical Meetings, Chicago, IL.[Paper]
- Satagopan JM, Yandell BS, Newton MA, Osborn TC (1996) Markov chain Monte Carlo approach to detect polygene loci for complex traits. Genetics 144: 805-816. [Paper]
- Yi N, Xu S, George V, Allison DB (2004) Mapping multiple quantitative trait loci for ordinal traits. Behavior Genetics 34: 3-15. [Paper]
- Yi N, Yandell BS, Churchill GA, Allison DB, Eisen EJ, Pomp D (2005) Bayesian model selection for genome-wide epistatic quantitative trait loci analysis. Genetics 170: 1333-1344. [Paper]
- Yi N (2004) A unified Markov chain Monte Carlo framework for mapping multiple quantitative trait loci. Genetics 167: 967-975. [Paper]
- Yandell BS, Mehta T, Banerjee S, Shriner D, Venkataraman R, Moon JY, Neely WW, Wu H, Smith R, Yi N (2007) R/qtlbim: QTL with Bayesian Interval Mapping in experimental crosses. Bioinformatics 23(5):641-643; doi:10.1093/bioinformatics/btm011 [Paper]
